PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g032710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 90aa    MW: 10104.2 Da    PI: 8.8443
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g032710.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.93.8e-312276259
       ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                      ++vrY eC++NhAas+Gg+++DGC+E+mp+    +t+ +l+CaACgCHRnFHRreve+
  Sopen02g032710.1 22 RRVRYVECQRNHAASVGGYVIDGCREYMPE---GTTSGTLNCAACGCHRNFHRREVET 76
                      689**************************8...567899****************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-201987IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.1E-272474IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-242574IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.062673IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MKKVLRRNDY SRNSTNSSFT MRRVRYVECQ RNHAASVGGY VIDGCREYMP EGTTSGTLNC  60
AACGCHRNFH RREVETDVAS ECTSASSTTK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-151HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234189.12e-61mini zinc finger protein
SwissprotQ9LJW51e-27MIF2_ARATH; Mini zinc finger protein 2
TrEMBLA0ZXL13e-61A0ZXL1_SOLLC; Mini zinc finger protein
STRINGSolyc02g087970.1.17e-61(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11052486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.18e-29mini zinc finger 2